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Bioprocess Engineering

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lightbulbAbout this topic
Bioprocess Engineering is a field of engineering that focuses on the design, optimization, and operation of processes that use biological organisms or systems to produce products, such as pharmaceuticals, biofuels, and food. It integrates principles from biology, chemistry, and engineering to develop efficient and sustainable bioproduct manufacturing methods.
lightbulbAbout this topic
Bioprocess Engineering is a field of engineering that focuses on the design, optimization, and operation of processes that use biological organisms or systems to produce products, such as pharmaceuticals, biofuels, and food. It integrates principles from biology, chemistry, and engineering to develop efficient and sustainable bioproduct manufacturing methods.

Key research themes

1. How can automation and parallelization accelerate bioprocess development and optimization in miniaturized bioreactor systems?

This research theme focuses on advancing bioprocess development efficiency by integrating automated, parallelized miniature bioreactors with sophisticated scheduling and control software. It addresses the challenge of reducing manual workload, enhancing experimental throughput, and improving data reliability and scalability from micro to industrial scale. The miniaturization of bioreactors combined with liquid handling stations mandates strategies to overcome scheduling bottlenecks and automate complex operations such as feeding, sampling, and pH control to achieve robust, high-throughput process optimization.

Key finding: The study developed and demonstrated a fully automated system coupling a liter-scale stirred-tank bioreactor for biomass production with downstream parallelized 48 mL-scale bioreactors for protein expression studies... Read more
Key finding: This work introduced a dynamic scheduling software solution that orchestrates multiple simultaneous tasks on liquid handling stations managing miniaturized parallel bioreactors. By dynamically prioritizing feeding, sampling,... Read more
Key finding: This study demonstrated an automated, repeated batch ALE method using parallel liter-scale stirred-tank bioreactors with controlled offline monitoring (soft sensors via off-gas analysis) to estimate biomass and growth rate.... Read more

2. What roles do omics technologies and hybrid neural network modeling play in enhancing understanding and control of industrial bioprocesses?

This theme examines how integrative omics data analyses (genomics, transcriptomics, proteomics, metabolomics, interactomics) combined with advanced computational modeling, particularly hybrid mechanistic-artificial neural network models, facilitate deeper physiological insights, real-time monitoring, and optimized control of complex biological systems in industrial bioprocessing. The combination addresses challenges associated with incomplete mechanistic knowledge, nonlinear dynamics, and noisy data inherent to bioprocesses, positioning hybrid models as powerful tools for predictive analytics, software sensor development, and model-based control within quality-by-design frameworks.

Key finding: The paper provides an extensive review of omics technologies applied in industrial biotechnology to characterize microbial strains comprehensively at the genetic, transcriptomic, proteomic, metabolomic, and interactomic... Read more
Key finding: This systematic review surveyed 30 years of hybrid neural network (HANN) applications combining mechanistic models with artificial neural networks in bioprocesses. It identified that HANNs have been extensively used for... Read more
Key finding: This paper reviews the evolution of hybrid neural network models from shallow feedforward networks integrated with mechanistic bioprocess equations to deep neural network architectures. It underscores that hybrid models can... Read more

3. What are the current developments and challenges in bioprocess control and bioreactor design for improved scalability and sustainability?

This theme centers on advancements in bioprocess control strategies, spanning conventional PID to model predictive and AI-based control, aiming at handling the nonlinear, variable, and complex nature of bioprocesses. It further covers bioreactor engineering innovations, including novel reactor designs to mitigate cell damage and improve oxygen transfer, and the development of modular, scalable bioreactors for diverse applications. Sustainability considerations such as eco-friendly feedstocks, green lubricants, biofuel production, and building vaccine manufacturing capacity in resource-limited settings are also integral to contemporary bioprocess engineering challenges.

Key finding: The study investigates hydrodynamic and mass transfer characteristics in uncovered, unbaffled stirred tanks (UUST) that avoid bubble-induced cell damage by oxygen transfer through free surface vortices instead of sparging. It... Read more
Key finding: This comprehensive review outlines traditional and modern bioprocess control strategies including open-loop, closed-loop, adaptive, fuzzy logic, neural network-based, and model predictive control. It highlights the... Read more
Key finding: This study designed and evaluated a modular chain bioreactor (MCB) system employing interconnected, sterilizable plastic bag modules with air and moisture circulation via filtered connectors to improve biomass production of... Read more
Key finding: The review examines bioengineering strategies for sustainable biodiesel production from diverse feedstocks including microalgae, yeast, and plants, highlighting metabolic engineering to enhance lipid accumulation, substrate... Read more
Key finding: This paper reviews current strategies and challenges to establish vaccine and biotherapeutics manufacturing capacity in Africa using an ecosystems approach. It stresses simultaneous investments in research infrastructure,... Read more

All papers in Bioprocess Engineering

Soil fertility depletion is at stake both local and global scale, putting pressure on food security, poverty alleviation and ecosystem services under threat to smallholder farmers agriculture livelihoods in ginger and turmeric... more
Bulk, porous oil-bearing materials acquire various degrees of densification under varying influences of equipment and process parameters with direct bearings on yield during compressive abstraction of oil from such materials. Effects of... more
The effects of important process parameters on mechanical response during the densification of an industrial food powder were investigated and important phenomena described using the power rule. The factors studied had highly significant... more
Compressive expression of oil from bulk seeds is a self-limiting process and commonly adopted techniques for optimising oil recovery result in alterations of the product and its quality. In this study, effects of select magnitudes of... more
The biological process for OMW treatment is based on an aerobic detoxification step followed by methanization step and aerobic post-treatment. The first aerobic detoxification step of OMW supplemented with sulfate and ammonium was carried... more
The conventional penicillin submerged culture has several drawbacks: filamentous fungi solidify into pellets or become pulpy, which has so far had bad effects on the separation of penicillin from the broth, on the monitoring and... more
In order to improve the cultivation properties of a traditional continuous stirred tank reactor (CSTR), we introduced a circulation unit made of four inorganic membranes in stainless steel tubes in parallel configuration, the so-called... more
This document constitutes a defensive publication disclosing the industrial applications of the Distributed Rotational Flow Platform (DRFP), derived from Korean Patent KR 10-2340860. The disclosure is structured across two application... more
This document constitutes a prior art disclosure of the Distributed Rotational Flow Platform (DRFP), a fluid dynamics device derived from the inventive principles of Korean Patent KR 10-2340860. The DRFP generates a stable, centrally... more
This research investigates the levels of heavy metal contamination in soils exposed to raw and peroxide-aeration recycled cassava processing effluent and potential impact on soil quality and environmental health. Cassava processing... more
In this work the concept of bubble-free oxygenation that was able to ensure oxygen supply and carbon dioxide extraction for a chemostat culture of Escherichia coli was experimentally demonstrated. It was operated at the dilution rate of... more
Wasliyah yang telah banyak memberikan arahan baik pada perkuliahan mapun dalam penulisan makalah ini, sehinga dapat diselesaikan dengan baik dan tepat waktu. Kami menyadari bahwa makalah ini tidak luput dari segala kekurangan,dan masih... more
Wasliyah yang telah banyak memberikan arahan baik pada perkuliahan mapun dalam penulisan makalah ini, sehinga dapat diselesaikan dengan baik dan tepat waktu. Kami menyadari bahwa makalah ini tidak luput dari segala kekurangan,dan masih... more
Wasliyah yang telah banyak memberikan arahan baik pada perkuliahan mapun dalam penulisan makalah ini, sehinga dapat diselesaikan dengan baik dan tepat waktu. Kami menyadari bahwa makalah ini tidak luput dari segala kekurangan,dan masih... more
Wasliyah yang telah banyak memberikan arahan baik pada perkuliahan mapun dalam penulisan makalah ini, sehinga dapat diselesaikan dengan baik dan tepat waktu. Kami menyadari bahwa makalah ini tidak luput dari segala kekurangan,dan masih... more
The on-line measurement of the relevant sNs parameters and the control conception for three production Ks, Ns processes for fine chemicals by fermentation and Ki, 6HNS biotransformation at the 15 m 3 scale were developed. The Ko2 models... more
Laporan ini membahas analisis produk bioteknologi berupa Biokul Yogurt Plain sebagai produk fermentasi susu yang mengandung bakteri probiotik. Produk ini memiliki karakteristik semi-padat, rasa asam khas fermentasi, serta mengandung... more
Abandoned mine tailings pose significant environmental risks due to their potential to release toxic metals through the production of Acid Mine Drainage. These tailings are remnants of ore processing and often contain heavy metals and... more
Recent literature and patents have evidenced poly(3-hydroxybutyrate-co-3-hydroxyhexanoate) copolymers P(3HB-co-3HHx) as a new biomaterial for medical applications. A Burkholderia sacchari recombinant, harboring Aeromonas sp. genes phaPCJ... more
High cell density (HCD) fed-batch cultures are widely perceived as a requisite for high-productivity polyhydroxyalkanoate (PHA) cultivation processes. In this work, a reactive pulse feed strategy (based on real-time CO 2 or dissolved... more
The rheology of high-cell density (HCD) cultures is an important parameter for its impact on mixing and sparging, process scale-up, and downstream unit operations in bioprocess development. In this work, time-dependent rheological... more
Demand for freshwater is increasing rapid due to population growth and climate change. A potential solution to this problem is the use of biodesalination, which involves the removal of salt from seawater and brackish water using... more
Aromatic plants and spice are well known for their beneficial properties on human health. A considerable amount of literature is present where the studies are mainly focused on the antioxidant and antimicrobial properties of the plant... more
Abstract: The conversion of starch to sugar can be achieved by hydrolysis process. The two-step enzymatic hydrolysis of sweet sorghum was performed by commercially available α-amylase and glucoamylase. An optimisation study was carried... more
A new concept of Power line Communication. Now human operators do the Meter reading for the consumption of Electricity from house to house and building to building. It requires huge number of labor and takes more time to complete the... more
Bacillus subtilis A10 isolated from orchard soil, Kahramanmaras, Turkey. The enzyme synthesis was observed between pH 7.0-11.0, with an optimum 37°C. The amylase was purified by fractional ammonium sulfate precipitation and sephadex G-100... more
A transient model for bioleaching of copper sulphide minerals in heaps/dumps with forced aeration was developed for a bed formed by particles of different particle sizes. Equations for the transport of oxygen, mass balance for copper and... more
PRODUCTION of blue-green pigment and failure to ferment any of the usual coliform test sugars except, occasionally, glucose are generally regarded as character- istic of Pseudomonas pyocyanea, the most commonly isolated of the Pseudomonas... more
The study was carried out to evaluate the physicochemical, rheological and sensory properties of corn-based salad cream. Standard analytical methods were used in measuring the physicochemical composition and rheological property; while a... more
Resumen: El presente trabajo es el desarrollo de un complemento para MSExcel® denominado TurboMix. Éste se basa en la respuesta dinámica de los fluidos a mezclar y permite el dimensionamiento de tanques agitados con turbinas de cuatro... more
A high cell density p~ocess for C. utilis prod~~tion on mo~asses was de.veloped. A demon~~ration plant producinj. 70.8 kg h-I was operated In 1990 and 1991. C. uuhs was contmuously cultzvated at cell densltles of 80 to 110 kg m-In an... more
Antibiotics are of great importance in medicine, that are harmful to the growth and metabolic activities of bacteria. Ever increasing search is going on in the hope that agents' superior to these and other antibiotics now in use might be... more
Ethnobotanical and biochemical studies are useful to discover new drugs. Biochemical screening is an important step in the detection of the bioactive components existing in medicinal plants that are used in traditional medicine.... more
The key parameters that affect Cyanothece 51142 growth kinetics were investigated and optimised. These include the light intensity, temperature, nitrogen source and growth conditionphotoautotrophic and photoheterotrophic. The Cyanothece... more
Black tea comes from perfectly fermented tea leaves and is one of Indonesia's main export commodities. The high level of black tea exports requires producers to produce high-quality products. One way to realize quality and safe... more
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